IL_8T4S_021

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8T4S|1|2|U|368, 8T4S|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_021 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.406

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8T4S|1|2|U|366
8T4S|1|2|U|367
8T4S|1|2|U|368
8T4S|1|2|C|369
8T4S|1|2|G|370
8T4S|1|2|A|371
*
8T4S|1|2|U|393
8T4S|1|2|G|394

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11