IL_8T4S_031

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1274

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8T4S|1|2|G|563
8T4S|1|2|A|564
8T4S|1|2|G|565
*
8T4S|1|2|C|585
8T4S|1|2|G|586
8T4S|1|2|A|587
8T4S|1|2|G|588
8T4S|1|2|G|589
8T4S|1|2|A|590
8T4S|1|2|U|591
8T4S|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

FAU ubiquitin-like and ribosomal protein S30