IL_8T4S_053

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_053 not in the Motif Atlas

Homologous match to IL_8C3A_442

Geometric discrepancy: 0.0699

The information below is about IL_8C3A_442

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8T4S|1|2|C|1047
8T4S|1|2|G|1048
8T4S|1|2|A|1049
8T4S|1|2|A|1050
8T4S|1|2|G|1051
*
8T4S|1|2|C|1067
8T4S|1|2|G|1068
8T4S|1|2|U|1069
8T4S|1|2|A|1070
8T4S|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26