IL_8T4S_066

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUG*CCU

Length

7 nucleotides

Bulged bases

8T4S|1|2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T4S_066 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.173

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8T4S|1|2|G|1324
8T4S|1|2|G|1325
8T4S|1|2|U|1326
8T4S|1|2|G|1327
*
8T4S|1|2|C|1502
8T4S|1|2|C|1503
8T4S|1|2|U|1504

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a