IL_8T5D_041
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 8T5D|1|B|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_041 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.1342
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
8T5D|1|B|U|1018
8T5D|1|B|U|1019
8T5D|1|B|A|1020
8T5D|1|B|A|1021
8T5D|1|B|G|1022
8T5D|1|B|U|1023
8T5D|1|B|G|1024
*
8T5D|1|B|C|1140
8T5D|1|B|U|1141
8T5D|1|B|A|1142
8T5D|1|B|A|1143
8T5D|1|B|A|1144
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
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