3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
8T5D|1|B|A|1127, 8T5D|1|B|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5D_042 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0875
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

8T5D|1|B|G|1024
8T5D|1|B|G|1025
8T5D|1|B|G|1026
8T5D|1|B|A|1027
8T5D|1|B|A|1028
8T5D|1|B|A|1029
8T5D|1|B|C|1030
*
8T5D|1|B|G|1124
8T5D|1|B|G|1125
8T5D|1|B|A|1126
8T5D|1|B|A|1127
8T5D|1|B|G|1128
8T5D|1|B|A|1129
8T5D|1|B|U|1130
8T5D|1|B|G|1131
8T5D|1|B|U|1132
8T5D|1|B|A|1133
8T5D|1|B|A|1134
8T5D|1|B|C|1135
8T5D|1|B|G|1136
8T5D|1|B|G|1137
8T5D|1|B|G|1138
8T5D|1|B|G|1139
8T5D|1|B|C|1140

Current chains

Chain B
23S RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16

Coloring options:


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