IL_8T5D_045

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8T5D|1|B|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|C|1043
8T5D|1|B|C|1044
8T5D|1|B|C|1045
8T5D|1|B|A|1046
8T5D|1|B|G|1047
8T5D|1|B|A|1048
8T5D|1|B|C|1049
8T5D|1|B|A|1050
8T5D|1|B|G|1051
8T5D|1|B|C|1052
*
8T5D|1|B|G|1107
8T5D|1|B|U|1108
8T5D|1|B|C|1109
8T5D|1|B|G|1110
8T5D|1|B|A|1111
8T5D|1|B|G|1112

Current chains

Chain B

23S RNA

Nearby chains

Chain G

50S ribosomal protein L6