IL_8T5D_047

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8T5D|1|B|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_047 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.281

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8T5D|1|B|G|1087
8T5D|1|B|A|1088
8T5D|1|B|A|1089
8T5D|1|B|A|1090
*
8T5D|1|B|U|1101
8T5D|1|B|C|1102

Current chains

Chain B

23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36