IL_8T5D_060

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

8T5D|1|B|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_060 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.2953

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8T5D|1|B|U|1467
8T5D|1|B|U|1468
8T5D|1|B|A|1469
8T5D|1|B|A|1470
8T5D|1|B|G|1471
*
8T5D|1|B|U|1520
8T5D|1|B|G|1521
8T5D|1|B|A|1522
8T5D|1|B|U|1523
8T5D|1|B|G|1524
8T5D|1|B|A|1525

Current chains

Chain B

23S RNA

Nearby chains