IL_8T5D_062

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_062 not in the Motif Atlas

Homologous match to IL_5J7L_301

Geometric discrepancy: 0.2968

The information below is about IL_5J7L_301

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8T5D|1|B|U|1481
8T5D|1|B|G|1482
*
8T5D|1|B|C|1507
8T5D|1|B|A|1508
8T5D|1|B|A|1509
8T5D|1|B|G|1510

Current chains

Chain B

23S RNA

Nearby chains