IL_8T5D_069

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8T5D|1|B|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_069 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0739

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|C|1686
8T5D|1|B|G|1687
8T5D|1|B|U|1688
8T5D|1|B|A|1689
8T5D|1|B|A|1690
8T5D|1|B|C|1691
*
8T5D|1|B|G|1696
8T5D|1|B|G|1697
8T5D|1|B|A|1698
8T5D|1|B|G|1699
8T5D|1|B|A|1700
8T5D|1|B|A|1701
8T5D|1|B|G|1702

Current chains

Chain B

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain v

Small subunit ribosomal RNA; SSU rRNA