IL_8T5D_080
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 8T5D|1|B|A|1938, 8T5D|1|B|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_080 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1278
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
8T5D|1|B|C|1934
8T5D|1|B|G|1935
8T5D|1|B|A|1936
8T5D|1|B|A|1937
8T5D|1|B|A|1938
8T5D|1|B|U|1939
8T5D|1|B|U|1940
8T5D|1|B|C|1941
8T5D|1|B|C|1942
8T5D|1|B|U|1943
8T5D|1|B|U|1944
8T5D|1|B|G|1945
*
8T5D|1|B|C|1961
8T5D|1|B|C|1962
8T5D|1|B|U|1963
8T5D|1|B|G|1964
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain v
- Small subunit ribosomal RNA; SSU rRNA
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