IL_8T5D_088

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGA*UUAAUG

Length

12 nucleotides

Bulged bases

8T5D|1|B|A|2184, 8T5D|1|B|U|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|C|2103
8T5D|1|B|C|2104
8T5D|1|B|U|2105
8T5D|1|B|U|2106
8T5D|1|B|G|2107
8T5D|1|B|A|2108
*
8T5D|1|B|U|2181
8T5D|1|B|U|2182
8T5D|1|B|A|2183
8T5D|1|B|A|2184
8T5D|1|B|U|2185
8T5D|1|B|G|2186

Current chains

Chain B

23S RNA

Nearby chains