IL_8T5D_092

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_092 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1223

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8T5D|1|B|C|2350
8T5D|1|B|G|2351
8T5D|1|B|A|2352
8T5D|1|B|G|2353
*
8T5D|1|B|C|2364
8T5D|1|B|G|2365
8T5D|1|B|A|2366
8T5D|1|B|G|2367

Current chains

Chain B

23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain W

50S ribosomal protein L27