IL_8T5D_097

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_097 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.142

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8T5D|1|B|A|2459
8T5D|1|B|U|2460
8T5D|1|B|A|2461
*
8T5D|1|B|U|2489
8T5D|1|B|G|2490
8T5D|1|B|U|2491
8T5D|1|B|U|2492
8T5D|1|B|U|2493

Current chains

Chain B

23S RNA

Nearby chains

Chain M

50S ribosomal protein L16