IL_8T5D_101

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8T5D|1|B|A|2572, 8T5D|1|B|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_101 not in the Motif Atlas

Homologous match to IL_8VTW_097

Geometric discrepancy: 0.0963

The information below is about IL_8VTW_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8T5D|1|B|C|2512
8T5D|1|B|A|2513
*
8T5D|1|B|U|2571
8T5D|1|B|A|2572
8T5D|1|B|C|2573
8T5D|1|B|G|2574

Current chains

Chain B

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13