IL_8T5D_138

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8T5D|1|v|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_138 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.094

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8T5D|1|v|G|446
8T5D|1|v|G|447
8T5D|1|v|A|448
8T5D|1|v|G|449
8T5D|1|v|G|450
*
8T5D|1|v|C|483
8T5D|1|v|G|484
8T5D|1|v|U|485
8T5D|1|v|U|486
8T5D|1|v|A|487
8T5D|1|v|C|488

Current chains

Chain v

16s RNA

Nearby chains

Chain c

30S ribosomal protein S4

Chain o

30S ribosomal protein S16