IL_8T5D_157

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8T5D|1|v|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T5D_157 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.4485

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8T5D|1|v|G|925
8T5D|1|v|G|926
8T5D|1|v|G|927
*
8T5D|1|v|U|1390
8T5D|1|v|U|1391

Current chains

Chain v

16s RNA

Nearby chains