IL_8T5D_163

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8T5D|1|v|U|1030, 8T5D|1|v|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|v|G|1003
8T5D|1|v|A|1004
8T5D|1|v|A|1005
8T5D|1|v|G|1006
*
8T5D|1|v|U|1023
8T5D|1|v|G|1024
8T5D|1|v|U|1025
8T5D|1|v|G|1026
8T5D|1|v|C|1027
8T5D|1|v|C|1028
8T5D|1|v|U|1029
8T5D|1|v|U|1030
8T5D|1|v|C|1031
8T5D|1|v|G|1032
8T5D|1|v|G|1033
8T5D|1|v|G|1034
8T5D|1|v|A|1035
8T5D|1|v|A|1036
8T5D|1|v|C|1037

Current chains

Chain v

16s RNA

Nearby chains

Chain m

30S ribosomal protein S14