3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUCAC*GAAGUC
Length
11 nucleotides
Bulged bases
8T5D|1|v|A|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T5D_177 not in the Motif Atlas
Homologous match to IL_6CZR_167
Geometric discrepancy: 0.4992
The information below is about IL_6CZR_167
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
18

Unit IDs

8T5D|1|v|G|1405
8T5D|1|v|U|1406
8T5D|1|v|C|1407
8T5D|1|v|A|1408
8T5D|1|v|C|1409
*
8T5D|1|v|G|1491
8T5D|1|v|A|1492
8T5D|1|v|A|1493
8T5D|1|v|G|1494
8T5D|1|v|U|1495
8T5D|1|v|C|1496

Current chains

Chain v
16s RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S12
Chain x
lmRNA

Coloring options:


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