IL_8T5D_177
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCAC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 8T5D|1|v|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T5D_177 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.4992
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8T5D|1|v|G|1405
8T5D|1|v|U|1406
8T5D|1|v|C|1407
8T5D|1|v|A|1408
8T5D|1|v|C|1409
*
8T5D|1|v|G|1491
8T5D|1|v|A|1492
8T5D|1|v|A|1493
8T5D|1|v|G|1494
8T5D|1|v|U|1495
8T5D|1|v|C|1496
Current chains
- Chain v
- 16s RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S12
- Chain x
- lmRNA
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