IL_8T5D_186

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUU

Length

39 nucleotides

Bulged bases

8T5D|1|B|U|2111, 8T5D|1|B|G|2116, 8T5D|1|B|A|2117, 8T5D|1|B|U|2118, 8T5D|1|B|A|2183, 8T5D|1|B|A|2184, 8T5D|1|B|U|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|G|2100
8T5D|1|B|A|2101
8T5D|1|B|G|2102
8T5D|1|B|C|2103
8T5D|1|B|C|2104
8T5D|1|B|U|2105
8T5D|1|B|U|2106
8T5D|1|B|G|2107
8T5D|1|B|A|2108
8T5D|1|B|U|2109
8T5D|1|B|G|2110
8T5D|1|B|U|2111
8T5D|1|B|G|2112
8T5D|1|B|U|2113
8T5D|1|B|A|2114
8T5D|1|B|G|2115
8T5D|1|B|G|2116
8T5D|1|B|A|2117
8T5D|1|B|U|2118
8T5D|1|B|A|2119
8T5D|1|B|G|2120
8T5D|1|B|G|2121
8T5D|1|B|U|2122
8T5D|1|B|G|2123
*
8T5D|1|B|C|2175
8T5D|1|B|A|2176
8T5D|1|B|C|2177
8T5D|1|B|C|2178
8T5D|1|B|C|2179
8T5D|1|B|U|2180
8T5D|1|B|U|2181
8T5D|1|B|U|2182
8T5D|1|B|A|2183
8T5D|1|B|A|2184
8T5D|1|B|U|2185
8T5D|1|B|G|2186
8T5D|1|B|U|2187
8T5D|1|B|U|2188
8T5D|1|B|U|2189

Current chains

Chain B

23S RNA

Nearby chains