IL_8T79_003

3D structure

PDB id

8T79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAAU*ATTTC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T79|1|B|G|12
8T79|1|B|A|13
8T79|1|B|A|14
8T79|1|B|A|15
8T79|1|B|U|16
*
8T79|1|C|DA|24
8T79|1|C|DT|25
8T79|1|C|DT|26
8T79|1|C|DT|27
8T79|1|C|DC|28

Current chains

Chain B

gRNA

Chain C

TS

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1