IL_8T8B_043
3D structure
- PDB id
- 8T8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GAGUGC*GCUC
- Length
- 10 nucleotides
- Bulged bases
- 8T8B|1|1A|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T8B_043 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.3699
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8T8B|1|1A|G|1087
8T8B|1|1A|A|1088
8T8B|1|1A|G|1089
8T8B|1|1A|U|1090
8T8B|1|1A|G|1091
8T8B|1|1A|C|1092
*
8T8B|1|1A|G|1099
8T8B|1|1A|C|1100
8T8B|1|1A|U|1101
8T8B|1|1A|C|1102
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1Q
- 50S ribosomal protein L16
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