IL_8T8B_141
3D structure
- PDB id
- 8T8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.65 Å
Loop
- Sequence
- GU*AUAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T8B_141 not in the Motif Atlas
- Homologous match to IL_4LFB_025
- Geometric discrepancy: 0.0896
- The information below is about IL_4LFB_025
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 29
Unit IDs
8T8B|1|1a|G|597
8T8B|1|1a|U|598
*
8T8B|1|1a|A|640
8T8B|1|1a|U|641
8T8B|1|1a|A|642
8T8B|1|1a|C|643
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1h
- 30S ribosomal protein S8
- Chain 1q
- 30S ribosomal protein S17
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