IL_8T8C_063

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_063 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.2077

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8T8C|1|1A|G|1529
8T8C|1|1A|C|1530
8T8C|1|1A|C|1531
*
8T8C|1|1A|G|1538
8T8C|1|1A|G|1539
8T8C|1|1A|U|1540

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17