3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
8T8C|1|1A|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_107 not in the Motif Atlas
Homologous match to IL_7RQB_107
Geometric discrepancy: 0.0387
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8T8C|1|1A|G|2737
8T8C|1|1A|A|2738
8T8C|1|1A|U|2739
8T8C|1|1A|A|2740
8T8C|1|1A|A|2741
8T8C|1|1A|C|2742
*
8T8C|1|1A|G|2762
8T8C|1|1A|G|2763
8T8C|1|1A|A|2764
8T8C|1|1A|A|2765
8T8C|1|1A|G|2766
8T8C|1|1A|C|2767

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6
Chain 1N
50S ribosomal protein L13

Coloring options:


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