3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GU*AUAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T8C_316 not in the Motif Atlas
Homologous match to IL_4LFB_025
Geometric discrepancy: 0.0819
The information below is about IL_4LFB_025
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
18

Unit IDs

8T8C|1|2a|G|597
8T8C|1|2a|U|598
*
8T8C|1|2a|A|640
8T8C|1|2a|U|641
8T8C|1|2a|A|642
8T8C|1|2a|C|643

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2h
30S ribosomal protein S8
Chain 2q
30S ribosomal protein S17

Coloring options:


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