IL_8T8C_369

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAGGA*UUUAAAGAGUGCGUAAUAGCUCACUG

Length

31 nucleotides

Bulged bases

8T8C|1|2A|U|1082, 8T8C|1|2A|U|1083, 8T8C|1|2A|A|1088, 8T8C|1|2A|C|1092, 8T8C|1|2A|A|1095, 8T8C|1|2A|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|2A|C|1053
8T8C|1|2A|A|1054
8T8C|1|2A|G|1055
8T8C|1|2A|G|1056
8T8C|1|2A|A|1057
*
8T8C|1|2A|U|1081
8T8C|1|2A|U|1082
8T8C|1|2A|U|1083
8T8C|1|2A|A|1084
8T8C|1|2A|A|1085
8T8C|1|2A|A|1086
8T8C|1|2A|G|1087
8T8C|1|2A|A|1088
8T8C|1|2A|G|1089
8T8C|1|2A|U|1090
8T8C|1|2A|G|1091
8T8C|1|2A|C|1092
8T8C|1|2A|G|1093
8T8C|1|2A|U|1094
8T8C|1|2A|A|1095
8T8C|1|2A|A|1096
8T8C|1|2A|U|1097
8T8C|1|2A|A|1098
8T8C|1|2A|G|1099
8T8C|1|2A|C|1100
8T8C|1|2A|U|1101
8T8C|1|2A|C|1102
8T8C|1|2A|A|1103
8T8C|1|2A|C|1104
8T8C|1|2A|U|1105
8T8C|1|2A|G|1106

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6