IL_8T8C_372

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAUC*GGUUUG

Length

11 nucleotides

Bulged bases

8T8C|1|2A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|2A|U|2457
8T8C|1|2A|G|2458
8T8C|1|2A|A|2459
8T8C|1|2A|U|2460
8T8C|1|2A|C|2461
*
8T8C|1|2A|G|2489
8T8C|1|2A|G|2490
8T8C|1|2A|U|2491
8T8C|1|2A|U|2492
8T8C|1|2A|U|2493
8T8C|1|2A|G|2494

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2w

A-site Aminoacyl-tRNA Analog

Chain 2x

P-site Peptidyl-tRNA Analog RNA