IL_8T8C_380

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

8T8C|1|1A|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T8C_380 not in the Motif Atlas

Homologous match to IL_9DFE_086

Geometric discrepancy: 0.1611

The information below is about IL_9DFE_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|1A|G|2124
8T8C|1|1A|G|2125
8T8C|1|1A|A|2126
8T8C|1|1A|G|2127
*
8T8C|1|1A|C|2161
8T8C|1|1A|G|2162
8T8C|1|1A|C|2163
8T8C|1|1A|C|2164
8T8C|1|1A|G|2165
8T8C|1|1A|G|2166
8T8C|1|1A|U|2167
8T8C|1|1A|G|2168
8T8C|1|1A|A|2169
8T8C|1|1A|A|2170
8T8C|1|1A|A|2171
8T8C|1|1A|U|2172
8T8C|1|1A|A|2173
8T8C|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains