IL_8TOZ_001

3D structure

PDB id

8TOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Class III PreQ1 riboswitch double mutant U8C/A85G

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8TOZ|1|A|C|79

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8TOZ_001 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.291

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8TOZ|1|A|C|56
8TOZ|1|A|C|57
*
8TOZ|1|A|G|78
8TOZ|1|A|C|79
8TOZ|1|A|G|80

Current chains

Chain A

Class-III preQ1 riboswitch

Nearby chains