IL_8TSV_001

3D structure

PDB id

8TSV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Zika virus stem-loop A (SLA) top stem

Experimental method

X-RAY DIFFRACTION

Resolution

1.51 Å

Loop

Sequence

UGC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8TSV|1|A|U|6
8TSV|1|A|G|7
8TSV|1|A|C|8
*
8TSV|1|B|G|19
8TSV|1|B|A|20

Current chains

Chain A

Zika virus stem-loop A (SLA) top stem

Chain B

Zika virus stem-loop A (SLA) top stem

Nearby chains