IL_8UBA_001

3D structure

PDB id

8UBA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGG*UUCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UBA_001 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.3903

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

8UBA|1|G|A|374
8UBA|1|G|G|375
8UBA|1|G|G|376
*
8UBA|1|I|U|62
8UBA|1|I|U|63
8UBA|1|I|C|64
8UBA|1|I|U|65

Current chains

Chain G

Diversity-generating retroelement (DGR) RNA avd

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase