IL_8UBD_002
3D structure
- PDB id
- 8UBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UBD_002 not in the Motif Atlas
- Geometric match to IL_7ECP_001
- Geometric discrepancy: 0.1558
- The information below is about IL_7ECP_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8UBD|1|H|G|119
8UBD|1|H|C|120
8UBD|1|H|C|121
*
8UBD|1|I|G|53
8UBD|1|I|U|54
8UBD|1|I|C|55
Current chains
- Chain H
- Diversity-generating retroelement (DGR) RNA TR
- Chain I
- Diversity-generating retroelement (DGR) RNA Sp
Nearby chains
- Chain A
- Reverse transcriptase
Coloring options: