IL_8UBE_001

3D structure

PDB id

8UBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAUC*GGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UBE_001 not in the Motif Atlas

Geometric match to IL_8C3A_403

Geometric discrepancy: 0.3014

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8UBE|1|H|C|122
8UBE|1|H|A|123
8UBE|1|H|U|124
8UBE|1|H|C|125
*
8UBE|1|I|G|49
8UBE|1|I|G|50
8UBE|1|I|U|51
8UBE|1|I|G|52

Current chains

Chain H

Diversity-generating retroelement (DGR) RNA TR

Chain I

Diversity-generating retroelement (DGR) RNA Sp

Nearby chains

Chain A

Reverse transcriptase

Chain B

Avd

Chain G

Diversity-generating retroelement (DGR) RNA avd