IL_8UBF_001
3D structure
- PDB id
- 8UBF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Diversity-generating retroelement (DGR) ribonucleoprotein - Resting state 1c
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.61 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UBF_001 not in the Motif Atlas
- Geometric match to IL_4KNQ_004
- Geometric discrepancy: 0.1738
- The information below is about IL_4KNQ_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
8UBF|1|H|G|119
8UBF|1|H|C|120
8UBF|1|H|C|121
*
8UBF|1|I|G|53
8UBF|1|I|U|54
8UBF|1|I|C|55
Current chains
- Chain H
- Diversity-generating retroelement (DGR) RNA TR
- Chain I
- Diversity-generating retroelement (DGR) RNA Sp
Nearby chains
- Chain A
- Reverse transcriptase
- Chain B
- Avd
Coloring options: