IL_8UD6_057

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD6_057 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0601

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8UD6|1|1A|A|1469
8UD6|1|1A|G|1470
8UD6|1|1A|A|1471
8UD6|1|1A|A|1472
8UD6|1|1A|G|1473
*
8UD6|1|1A|U|1518
8UD6|1|1A|G|1519
8UD6|1|1A|G|1520
8UD6|1|1A|U|1523

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains