IL_8UD6_086
3D structure
- PDB id
- 8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UD6_086 not in the Motif Atlas
- Homologous match to IL_7RQB_089
- Geometric discrepancy: 0.048
- The information below is about IL_7RQB_089
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.10
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 33
Unit IDs
8UD6|1|1A|C|2350
8UD6|1|1A|G|2351
8UD6|1|1A|A|2352
8UD6|1|1A|G|2353
*
8UD6|1|1A|C|2364
8UD6|1|1A|G|2365
8UD6|1|1A|A|2366
8UD6|1|1A|G|2367
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 18
- 50S ribosomal protein L35
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