3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
AUC*GGUUU
Length
8 nucleotides
Bulged bases
8UD6|1|1A|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_091 not in the Motif Atlas
Homologous match to IL_7RQB_094
Geometric discrepancy: 0.04
The information below is about IL_7RQB_094
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform; mini C-loop
Motif group
IL_92788.2
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
14

Unit IDs

8UD6|1|1A|A|2459
8UD6|1|1A|U|2460
8UD6|1|1A|C|2461
*
8UD6|1|1A|G|2489
8UD6|1|1A|G|2490
8UD6|1|1A|U|2491
8UD6|1|1A|U|2492
8UD6|1|1A|U|2493

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 1Q
50S ribosomal protein L16
Chain 1w
Transfer RNA; tRNA

Coloring options:


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