3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_158 not in the Motif Atlas
Geometric match to IL_4LFB_047
Geometric discrepancy: 0.0663
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8UD6|1|1a|G|1061
8UD6|1|1a|U|1062
8UD6|1|1a|C|1063
*
8UD6|1|1a|G|1193
8UD6|1|1a|U|1194
8UD6|1|1a|C|1195

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1e
30S ribosomal protein S5
Chain 1i
30S ribosomal protein S9
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z
Chain 1v
MF-mRNA

Coloring options:


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