3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CC*GAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_283 not in the Motif Atlas
Homologous match to IL_5J7L_357
Geometric discrepancy: 0.0935
The information below is about IL_5J7L_357
Detailed Annotation
Major groove minor groove platform; mini C-loop
Broad Annotation
No text annotation
Motif group
IL_68140.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
19

Unit IDs

8UD6|1|2B|C|30
8UD6|1|2B|C|31
*
8UD6|1|2B|G|51
8UD6|1|2B|A|52
8UD6|1|2B|A|53
8UD6|1|2B|G|54

Current chains

Chain 2B
5S Ribosomal RNA

Nearby chains

Chain 2G
50S ribosomal protein L5
Chain 2S
50S ribosomal protein L18

Coloring options:


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