3D structure

PDB id
8UD6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD6_337 not in the Motif Atlas
Geometric match to IL_4LFB_053
Geometric discrepancy: 0.2434
The information below is about IL_4LFB_053
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_58310.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
25

Unit IDs

8UD6|1|2a|C|1259
8UD6|1|2a|C|1260
*
8UD6|1|2a|G|1274
8UD6|1|2a|A|1275
8UD6|1|2a|G|1276

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2u
30S ribosomal protein Thx

Coloring options:


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