IL_8UD6_358

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGCUAGGG*UACCAAACC

Length

17 nucleotides

Bulged bases

8UD6|1|2A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD6|1|2A|G|874
8UD6|1|2A|G|875
8UD6|1|2A|C|876
8UD6|1|2A|U|877
8UD6|1|2A|A|878
8UD6|1|2A|G|879
8UD6|1|2A|G|880
8UD6|1|2A|G|881
*
8UD6|1|2A|U|895
8UD6|1|2A|A|896
8UD6|1|2A|C|897
8UD6|1|2A|C|898
8UD6|1|2A|A|899
8UD6|1|2A|A|900
8UD6|1|2A|A|901
8UD6|1|2A|C|902
8UD6|1|2A|C|903

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25

Chain 2w

Transfer RNA; tRNA