3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
AUGAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD7_049 not in the Motif Atlas
Homologous match to IL_7RQB_049
Geometric discrepancy: 0.0279
The information below is about IL_7RQB_049
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8UD7|1|1A|A|1262
8UD7|1|1A|U|1263
8UD7|1|1A|G|1264
8UD7|1|1A|A|1265
8UD7|1|1A|G|1266
8UD7|1|1A|U|1267
8UD7|1|1A|A|1268
8UD7|1|1A|A|1269
*
8UD7|1|1A|U|2011
8UD7|1|1A|G|2012
8UD7|1|1A|A|2013
8UD7|1|1A|A|2014
8UD7|1|1A|A|2015
8UD7|1|1A|U|2016
8UD7|1|1A|U|2017

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 1F
50S ribosomal protein L4
Chain 1W
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1819 s