3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD7_178 not in the Motif Atlas
Homologous match to IL_7RQB_001
Geometric discrepancy: 0.0333
The information below is about IL_7RQB_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.6
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8UD7|1|2A|G|24
8UD7|1|2A|U|25
8UD7|1|2A|G|26
8UD7|1|2A|G|27
8UD7|1|2A|A|28
8UD7|1|2A|U|29
8UD7|1|2A|G|30
*
8UD7|1|2A|C|510
8UD7|1|2A|U|511
8UD7|1|2A|G|512
8UD7|1|2A|A|513
8UD7|1|2A|A|514
8UD7|1|2A|A|515
8UD7|1|2A|C|516

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2U
50S ribosomal protein L20
Chain 2W
50S ribosomal protein L22

Coloring options:


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