IL_8UD7_208

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

8UD7|1|2A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_208 not in the Motif Atlas

Geometric match to IL_4V9F_098

Geometric discrepancy: 0.3718

The information below is about IL_4V9F_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UD7|1|2A|G|880
8UD7|1|2A|G|881
*
8UD7|1|2A|U|895
8UD7|1|2A|A|896
8UD7|1|2A|C|897

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Z

50S ribosomal protein L25

Chain 2w

Transfer RNA; tRNA