3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAG*CGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD7_263 not in the Motif Atlas
Homologous match to IL_7RQB_089
Geometric discrepancy: 0.0487
The information below is about IL_7RQB_089
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.10
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
33

Unit IDs

8UD7|1|2A|C|2350
8UD7|1|2A|G|2351
8UD7|1|2A|A|2352
8UD7|1|2A|G|2353
*
8UD7|1|2A|C|2364
8UD7|1|2A|G|2365
8UD7|1|2A|A|2366
8UD7|1|2A|G|2367

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 28
50S ribosomal protein L35

Coloring options:


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