3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAUGGUAC*GGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UD7_289 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.0532
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8UD7|1|2B|C|71
8UD7|1|2B|G|72
8UD7|1|2B|A|73
8UD7|1|2B|U|74
8UD7|1|2B|G|75
8UD7|1|2B|G|76
8UD7|1|2B|U|77
8UD7|1|2B|A|78
8UD7|1|2B|C|79
*
8UD7|1|2B|G|98
8UD7|1|2B|G|99
8UD7|1|2B|A|100
8UD7|1|2B|G|101
8UD7|1|2B|A|102
8UD7|1|2B|G|103
8UD7|1|2B|U|104
8UD7|1|2B|A|105
8UD7|1|2B|G|106

Current chains

Chain 2B
5S Ribosomal RNA

Nearby chains

Chain 2A
Large subunit ribosomal RNA; LSU rRNA
Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25

Coloring options:


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