IL_8UD7_293

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

8UD7|1|2a|C|48, 8UD7|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD7_293 not in the Motif Atlas

Homologous match to IL_6CZR_115

Geometric discrepancy: 0.1638

The information below is about IL_6CZR_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8UD7|1|2a|C|47
8UD7|1|2a|C|48
8UD7|1|2a|U|49
8UD7|1|2a|A|50
8UD7|1|2a|A|51
8UD7|1|2a|G|52
*
8UD7|1|2a|U|359
8UD7|1|2a|A|360
8UD7|1|2a|G|361

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12