IL_8UD8_070

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8UD8|1|1A|G|1801, 8UD8|1|1A|G|1816, 8UD8|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UD8_070 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0328

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UD8|1|1A|U|1798
8UD8|1|1A|G|1799
8UD8|1|1A|C|1800
8UD8|1|1A|G|1801
8UD8|1|1A|A|1802
8UD8|1|1A|A|1803
8UD8|1|1A|C|1804
*
8UD8|1|1A|G|1813
8UD8|1|1A|G|1814
8UD8|1|1A|A|1815
8UD8|1|1A|G|1816
8UD8|1|1A|G|1817
8UD8|1|1A|U|1818
8UD8|1|1A|A|1819
8UD8|1|1A|U|1820
8UD8|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA